YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696793, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTAARLVAA FCLALLAFIV SEQVKPQLPE GTDFGYFNWV NTGLGILCGW VIMGPRAGRG  60
   61 AVSGINNGLT GVGALVFWGL FVHGTYEMFR LAMRNRYDGP FDALLAIFEE AVEFGSALLV 120
  121 SHILVTLVIG AVISGLATDF AWRRWR

Type	Start	End	Confidence
Signal Peptide	1	21	0.69
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	35	0.82
Transmembrane Helix	36	54	0.93
Cytoplasmic	55	63	0.77
Transmembrane Helix	64	83	0.93
Non-Cytoplasmic	84	117	0.92
Transmembrane Helix	118	142	0.85
Cytoplasmic	143	146	0.96