YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696783, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.92
Transmembrane Helix	54	73	0.67
Non-Cytoplasmic	74	88	0.60
Transmembrane Helix	89	110	0.60
Cytoplasmic	111	119	0.77
Transmembrane Helix	120	142	0.92
Non-Cytoplasmic	143	150	0.71
Transmembrane Helix	151	171	0.88
Cytoplasmic	172	182	0.79
Transmembrane Helix	183	211	0.84
Non-Cytoplasmic	212	233	0.75
Transmembrane Helix	234	254	0.83
Cytoplasmic	255	261	0.68
Transmembrane Helix	262	283	0.90
Non-Cytoplasmic	284	331	0.74
Transmembrane Helix	332	353	0.93
Cytoplasmic	354	369	0.82
Transmembrane Helix	370	392	0.92
Non-Cytoplasmic	393	414	0.87
Transmembrane Helix	415	435	0.90
Cytoplasmic	436	456	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCSIAGAGI GRFRTLRALR RQKGAGMTVK NSASGPLSDS ATTAPPALAE MARVFGRIGL  60
   61 LSFGGPAAQI ALMHRELVET RPWLDEQTYL RALSLCMLLP GPEAMQLATY AGWRLRGVTG 120
  121 GLLAGALFVL PGALVIAALV AVYVQVGSVP LVQAGFLGIK AAVIVIVIEA LRKLAARTLK 180
  181 TPAAWILAGL AFVAIFALSL PFPLIVLAAA LWGFARTAPG ARAQTALPRP PYRSAALWLT 240
  241 LWLGPLLLLE RFGAPLLADI GWFMAKLAVV TFGGAYAVLA YMTQTVVDQY HWITTAQMID 300
  301 ALGLAETTPG PLILVTQFVA MLSAYLDGGA SLAALAGLVA LWATFVPCFL WIFTAAPYLD 360
  361 HIAGRPRPAA ALAAITAAVV GVILNLSLWF ALHVLFSDVS VLRAGPVSLP APQLSSFDPL 420
  421 ALALAALAAV WLILLRRGMG ETVLLLALAG AGSHFL