YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696709, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.94
Transmembrane Helix	10	31	0.94
Non-Cytoplasmic	32	38	0.79
Transmembrane Helix	39	58	0.91
Cytoplasmic	59	66	0.71
Transmembrane Helix	67	87	0.83
Non-Cytoplasmic	88	101	0.83
Transmembrane Helix	102	126	0.83
Cytoplasmic	127	132	0.62
Transmembrane Helix	133	152	0.94
Non-Cytoplasmic	153	169	0.75
Transmembrane Helix	170	190	0.90
Cytoplasmic	191	220	0.89
Transmembrane Helix	221	242	0.93
Non-Cytoplasmic	243	255	0.68
Transmembrane Helix	256	284	0.80
Cytoplasmic	285	300	0.53
Transmembrane Helix	301	322	0.85
Non-Cytoplasmic	323	339	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLSRAQRRG IVGAALLALI LIAIGLAATW FGSRYQLRLV YGAYVNLLVV LALQVFMGNA  60
   61 RVTNLSHSAF MGIGAYAAAI CVTPEKIKAI SLPDAPWGLN AFALDPVSSA LIALVLTGLV 120
  121 AWLVGVFIVR LTGIGATIVS LAVLVIVHGL FLYRTDIFKG NQAFFGIPQL FNLTWVVGLA 180
  181 VLVVFITRGF RESRWGVALR ASADDEVGAA AMGVDIHRLR LMAWVLSGVL LAVAGIAYAY 240
  241 YLGTISARPF YFNHVFLTLA MLILGGMRTV TGAVLGTFLI SFGLEWVRWL ETGPVVLGID 300
  301 LPEALGLSGI VLGGVIVLTM ALRPGGLMGD REIEDLILK