YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56678428, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGHASVLQD GSALSRLDRA LLRLERGLAL ISGLAVFSLM LLAVVSVGGR NAMNAPLPGY  60
   61 VDWIEQAMPL IAFMGIAFVQ REGGHIRMDL VIGQLKGRAL WLFELVSVLL ILGLMMLLVW 120
  121 GSWAHFLRAF DMGAPLWSRD SSIDIGIPLW PSKLLAPVAF SVLCLRLGLQ VWGYGRAFVL 180
  181 GLEAPVAVPL IQDVAAQAAA EAEQLAGHDN G

Type	Start	End	Confidence
Cytoplasmic	1	26	0.96
Transmembrane Helix	27	48	0.92
Non-Cytoplasmic	49	62	0.84
Transmembrane Helix	63	80	0.92
Cytoplasmic	81	99	0.89
Transmembrane Helix	100	124	0.90
Non-Cytoplasmic	125	148	0.91
Transmembrane Helix	149	169	0.81
Cytoplasmic	170	211	0.82