YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56678407, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVLRLLICL LCLALPAVAQ EGAPDRSATG GATTLEDILA RQRGEKVDDA YRATDTGSQT  60
   61 APLEAQLGVR GGASDSEIFR ALRYGAADVT VSARGPAADV IIQDDGMWWL SLREGALRDY 120
  121 GTYALAGMIV VLALFYLLRG RIRIDGARTG RSVTRFAAFE RFGHWLFAGS FLVLAVSGLI 180
  181 TLYGRDVLIP LLGKEAFATL ALACKWVHNN IAWAFMIGLA IVTVNWIAHN IPNRHDLKWL 240
  241 AVGGGLFSKG LHPPAKKFNA GQKIIFWLCI LLGLSISLSG LSLLFPFEMP MFAKTFALAN 300
  301 ATGLPQAMGL SLPEVMTPHQ EMQYAQLWHL IVAFAFITII IAHIYLGSLG MEGAFDAMGS 360
  361 GEVEEQWARE HHSLWLDEVK SAEASKARPS PAE

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	119	0.99
Transmembrane Helix	120	140	0.95
Cytoplasmic	141	161	0.93
Transmembrane Helix	162	183	0.95
Non-Cytoplasmic	184	210	0.91
Transmembrane Helix	211	229	0.96
Cytoplasmic	230	263	0.89
Transmembrane Helix	264	285	0.95
Non-Cytoplasmic	286	324	0.56
Transmembrane Helix	325	347	0.90
Cytoplasmic	348	393	0.55