YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56678402, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSFAQEMQA AFTLILAGDS ELLGIVALSL RVSLLAVLFA ALIGMPLGAA LAVGRFPGRR  60
   61 ALVVLVNALM GLPPVVVGLL VYLMLSRSGP LGVLQLLYTP TAMIIAQVVL VTPIIAALTR 120
  121 QVVEMLDAEY AEQMRSLGLS RLATVPVLLW DGRVALLTAV LAGFGRAIAE VGAVIIVGGN 180
  181 INHVTRVMTT AIALETSKGN LALALALGAV LIGIAIAVNA LVSLLGARSR AEVMAHA

Type	Start	End	Confidence
Cytoplasmic	1	9	0.69
Transmembrane Helix	10	28	0.71
Non-Cytoplasmic	29	33	0.59
Transmembrane Helix	34	54	0.90
Cytoplasmic	55	62	0.75
Transmembrane Helix	63	85	0.93
Non-Cytoplasmic	86	95	0.81
Transmembrane Helix	96	118	0.86
Cytoplasmic	119	143	0.77
Transmembrane Helix	144	178	0.64
Non-Cytoplasmic	179	200	0.61
Transmembrane Helix	201	225	0.89
Cytoplasmic	226	237	0.63