YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696631, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMSDARYMA LALSLGRRGQ GVCWPNPAVG CVIVNEGRIV GRGWTQPGGR PHAEVVALAQ  60
   61 AGGAARGATA YVTLEPCAHH GKTPPCAEAL IAAGVARVVA AIEDCDPRVA GNGFEMLRRA 120
  121 GIEVSVGIGE DAAARDLAGF FLKTELGRPW VTLKLASSFD GRIATASGES QWITGPEARR 180
  181 AVHAMRARHD AVLVGAGTAR SDDPSLTVRD MGVAQQPVRV VVSRYLDLPL MSQLARTARQ 240
  241 VPVWLCHGPG VDGDRVRAWE GTGARLIPCA VEAGQISATD LLRQLGGQGL TRVFCEGGAS 300
  301 LAASLLAADM VDELVGFTAG LAIGAEGLPA VGVLGLEQLS EAARFDLIET RAIGADILHR 360
  361 WQRQ

Type	Start	End	Confidence
Signal Peptide	1	21	0.52
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	364	0.95