YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696598, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.79
Transmembrane Helix	9	34	0.87
Non-Cytoplasmic	35	46	0.83
Transmembrane Helix	47	69	0.85
Cytoplasmic	70	84	0.67
Transmembrane Helix	85	115	0.73
Non-Cytoplasmic	116	136	0.62
Transmembrane Helix	137	161	0.77
Cytoplasmic	162	169	0.50
Transmembrane Helix	170	192	0.92
Non-Cytoplasmic	193	210	0.60
Transmembrane Helix	211	231	0.91
Cytoplasmic	232	238	0.51
Transmembrane Helix	239	258	0.82
Non-Cytoplasmic	259	269	0.61
Transmembrane Helix	270	292	0.90
Cytoplasmic	293	311	0.72
Transmembrane Helix	312	343	0.81
Non-Cytoplasmic	344	358	0.70
Transmembrane Helix	359	381	0.89
Cytoplasmic	382	393	0.73
Transmembrane Helix	394	415	0.87
Non-Cytoplasmic	416	425	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVAILFSIF VGGLVLGIPV AITLGLSSLA YLIAAGMPPV VMPQKMYAGM DVFVLLSIPG  60
   61 FILAGNLMNQ GGITGRIIRF ANALVGWIKG GLGLTNIAAS MLFGGITGTA VADAASLGGV 120
  121 LIPGMKKAGY PADFSAAVTA ASSTVGPIIP PSVPMIIVGA LSGISVGKMF LAGAIPGILM 180
  181 GIAMMVTAYI ISVRRGFPHQ PWQGFGEVAR SFAGAIWAIA MTFLIIYGLL SGLATPTETA 240
  241 VVASVYAFIV GAFIYRELPL GKVPGIVANS AVSAAGILAL VGFANVFGWI LVSERIPQAI 300
  301 ADGVLSITDN KFLVILLINL LLLFVGMFME TIAALIILFV PLLSLAQAVG IDPLHFATFA 360
  361 VLNLMIGLTT PPVGVCLFVC ANIARLPLAP VVRAIMPFLL TNILVLLAVS YFPPLATWLP 420
  421 SLLIP