YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696548, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGRWSDLT ARLGSAVVLA AVAGVELWLG GLWFESFIAI VTGLMVWELM RMIAPERRGA  60
   61 AVQMALLTGF AVLLAYHLPP LYRLPVLMAP ALVGAGQVDR HKGIYAIFAL WIAFAGLGFI 120
  121 WIREVMGLDW MLWLVLVVVA TDVAGYFVGK LIGGPKFWPR VSPKKTWSGT AGGWIAAALV 180
  181 GAGFALQAGL GASLLILSVL ASMASQAGDI AESALKRKMG VKDSSNLIPG HGGFLDRFDG 240
  241 MMGAAVFVLL AGLLRAFGGL

Type	Start	End	Confidence
Cytoplasmic	1	8	0.87
Transmembrane Helix	9	30	0.80
Non-Cytoplasmic	31	31	0.49
Transmembrane Helix	32	50	0.71
Cytoplasmic	51	59	0.54
Transmembrane Helix	60	80	0.88
Non-Cytoplasmic	81	102	0.55
Transmembrane Helix	103	122	0.95
Cytoplasmic	123	129	0.53
Transmembrane Helix	130	153	0.87
Non-Cytoplasmic	154	172	0.54
Transmembrane Helix	173	200	0.81
Cytoplasmic	201	237	0.54
Transmembrane Helix	238	259	0.86
Non-Cytoplasmic	260	260	0.57