YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56678229, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESIPDTIAR RTARNRWLLL IPALAILLFA ASGPLLITLV YSVLTPGDYG GVEWQFSLDA  60
   61 WFNVFMQRDI FDDTLGWSDA HLSIFWRSVK LSALTTLACL AFGFPTAYFI ATRPKKQRDL 120
  121 WMLLIIIPFW TNLLIRTFAI LELIRNEGTV NTVLIALGLI DEPIQMLFTE FSILLGMVYV 180
  181 YLPLMVLPIY ASMERFDFRL VEAGYDLYAT RFRVLRKVIL PLVKPGVIAG SILVFVPSLG 240
  241 AYVTPRVMGG GNQLMIGNLI ELQFGQGRNW PLGAALSITL LAIVMVALLA YVRVAGNEET 300
  301 PHG

Type	Start	End	Confidence
Cytoplasmic	1	16	0.99
Transmembrane Helix	17	41	0.90
Non-Cytoplasmic	42	90	0.94
Transmembrane Helix	91	111	0.94
Cytoplasmic	112	119	0.92
Transmembrane Helix	120	140	0.94
Non-Cytoplasmic	141	166	0.93
Transmembrane Helix	167	190	0.85
Cytoplasmic	191	220	0.94
Transmembrane Helix	221	243	0.90
Non-Cytoplasmic	244	271	0.92
Transmembrane Helix	272	292	0.95
Cytoplasmic	293	303	0.85