YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56678228, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAERVFDIRR QTGFTTIAIA CFAMLYMPII LLVIYSFNAG TSIAIWEGAS WRWYVSAWNN  60
   61 EQVQEATLRS LIIAVWASGI STTVAVLAAL ATTRTRRFRG QTAVFALINQ PLMVPEIVTA 120
  121 VALLIFFAMI KVATGYTGLA YLIIAHSAFC IPFAYLPIRA RLQGMDLSLE QAAADLYATP 180
  181 FQVFRRVTLP QLWPGILAGA MLAFVISLDD VVITEFVKSA GQDTLPTYML GQLRRVVTPE 240
  241 INAISTVLLS ISVTMVIAFT LLSKIRK

Type	Start	End	Confidence
Cytoplasmic	1	12	0.96
Transmembrane Helix	13	37	0.88
Non-Cytoplasmic	38	71	0.87
Transmembrane Helix	72	92	0.94
Cytoplasmic	93	106	0.88
Transmembrane Helix	107	130	0.85
Non-Cytoplasmic	131	136	0.76
Transmembrane Helix	137	158	0.90
Cytoplasmic	159	188	0.96
Transmembrane Helix	189	208	0.87
Non-Cytoplasmic	209	240	0.88
Transmembrane Helix	241	262	0.92
Cytoplasmic	263	267	0.82