YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56678160, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.49
Transmembrane Helix	8	34	0.72
Cytoplasmic	35	35	0.29
Transmembrane Helix	36	57	0.60
Non-Cytoplasmic	58	71	0.67
Transmembrane Helix	72	90	0.88
Cytoplasmic	91	101	0.80
Transmembrane Helix	102	123	0.89
Non-Cytoplasmic	124	134	0.75
Transmembrane Helix	135	152	0.92
Cytoplasmic	153	159	0.82
Transmembrane Helix	160	181	0.92
Non-Cytoplasmic	182	210	0.85
Transmembrane Helix	211	229	0.93
Cytoplasmic	230	236	0.88
Transmembrane Helix	237	262	0.85
Non-Cytoplasmic	263	276	0.71
Transmembrane Helix	277	296	0.93
Cytoplasmic	297	376	0.85
Transmembrane Helix	377	401	0.85
Non-Cytoplasmic	402	412	0.68
Transmembrane Helix	413	432	0.94
Cytoplasmic	433	465	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPAPRQLAL GFGGALLAAA AALSGPALAV GALAGALAGF AVLGNTVLGA YLLVALAQLD  60
   61 GIALLVDRHL PISLFKLVSA LVLLSLVLTV RRHPLMQGRL RLSPTAMFTL LFAIWLCVSY 120
  121 LASDWRAYSY DHTKGFLQTL LLVPILGLTV TAPRHLRRMV LVIAASGAIS AVFVILETVF 180
  181 GLRLLPYADE GDVAAWLGAV RSAGASAYNP TTASHLMAVS LMLALVMALH DRRGRRLWVL 240
  241 ISLLCLVALP MMGARSGAIA VAMGIGLIGF RMRHHRLFPA VALAAVGALV FAVLNAPDTL 300
  301 VERFGVLGDF LGEGDTADRS LLRRLSYNQI GLSLWAENPV TGLGPGAYPV NYASDAFRWY 360
  361 PGREAEARQL HNAYLEVAVE TGIVGIALFL GALLSAAWAA LKAGLHPVSE VQVLAQALGV 420
  421 AMAVFMFASL FMPNEDIKYT WILAALCARA AQLARGWRPD AGQGS