YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696376, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.44
Transmembrane Helix	5	23	0.55
Non-Cytoplasmic	24	29	0.55
Transmembrane Helix	30	48	0.65
Cytoplasmic	49	52	0.51
Transmembrane Helix	53	74	0.77
Non-Cytoplasmic	75	81	0.67
Transmembrane Helix	82	104	0.94
Cytoplasmic	105	112	0.74
Transmembrane Helix	113	135	0.86
Non-Cytoplasmic	136	154	0.79
Transmembrane Helix	155	175	0.96
Cytoplasmic	176	200	0.78
Transmembrane Helix	201	224	0.82
Non-Cytoplasmic	225	235	0.50
Transmembrane Helix	236	269	0.68
Cytoplasmic	270	276	0.46
Transmembrane Helix	277	300	0.80
Non-Cytoplasmic	301	582	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVLLPVSL LLAALLLIPE LFGDFTAYQI GLYLIYGIAA QGIGFLWGKT GVLPLGQALF  60
   61 FGFAAYVTAI TLRAETGLIT ELALAVAVLV AIAVFACALA ALIFRGRNDS GPYFSLITLA 120
  121 LVMIAEQIAG TATTLTGGFN GLSGFDSLGK LDPFAGFYYV IVGVTVAVSL LLFVLNRLPV 180
  181 NLIARAVADN EPRLQLLGFP THIIKGAAFA FSAVIAALAG GGCLPSHQGI VTPTSMGFGL 240
  241 SAELVILTAV GGRYHVLGPL IGAVLVGWAS AELRDSFPYW ELLMAVAFIL VVLKAPGGIA 300
  301 ELLEAGYRRV RATKPGAPSK VIAAPPTKAV DAAGPLRFDD VHLQIGVVRI LNGVSFQTPA 360
  361 TGIVSIIGPN GAGKTSTLNT ITGNLRITGG RITFGRRKID SRPPYKALHS GIGRKLQVPS 420
  421 VFFSMSVSEN LAIAMMANRS RLLDLLRPST YRWRSRSLSD LLDHPSVPLK EELVEPVDHL 480
  481 PQGHRQFLEY AMTIAAEPQV LLLDEPCAGL SPDETALMTD LVRHYQAETG GLVIVIEHDM 540
  541 SIVEAISDKV LVMHLGQVLA FDTFEQVRRN PEVQAVYAGG TK