YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696347, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.48
Transmembrane Helix	7	40	0.76
Cytoplasmic	41	60	0.46
Transmembrane Helix	61	89	0.68
Non-Cytoplasmic	90	108	0.53
Transmembrane Helix	109	135	0.77
Cytoplasmic	136	150	0.57
Transmembrane Helix	151	176	0.84
Non-Cytoplasmic	177	183	0.60
Transmembrane Helix	184	209	0.86
Cytoplasmic	210	229	0.64
Transmembrane Helix	230	253	0.91
Non-Cytoplasmic	254	258	0.57
Transmembrane Helix	259	279	0.90
Cytoplasmic	280	291	0.59
Transmembrane Helix	292	315	0.85
Non-Cytoplasmic	316	327	0.53
Transmembrane Helix	328	348	0.85
Cytoplasmic	349	354	0.43
Transmembrane Helix	355	370	0.56
Non-Cytoplasmic	371	371	0.39
Transmembrane Helix	372	399	0.78
Cytoplasmic	400	415	0.62
Transmembrane Helix	416	438	0.91
Non-Cytoplasmic	439	445	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWYEALVFL LGMILFFMAL GVPVALAFLA ANMIGAAYFM GGRGDIASQM ARGIGQLANN  60
   61 AIPTVTSFNL MPVPMFLLMG EIFFFTGLAN RMFGAVDRLM GKLPARLSFV TVAGGTAFAT 120
  121 LSGSSMGSTA LLGSLMVPEM QKRGYKKHMA IGPILGTGGL AMLIPPSALA VLLATLAELD 180
  181 IGDLLIAGIM PGLMLAIFYA VMILGMALYD PSAAPAYEVE SSDWVEKLRL LFVDILPMVS 240
  241 IVIGVILVIM FGIATPSESA AFGCLGVIVL AALYRSLTWE GIVKSVAGAL KVTTMALLII 300
  301 FGSATFSALL AFSGASSGLI RWATGFDLEP ITMLLIMFGI LLVLGMFMDQ LSMMLLTVPI 360
  361 FFPLAQTLGF DLIWFGVIVL LALEISFTTP PFGLLLFVMK GVSAPGTSMR DIYVSALPFI 420
  421 GCSMLLVALL IIFPGIALWL PGLGQ