YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696344, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRMDGVMTP QGADSARAIT KLVVMAVGGQ GGGVLTGWIE AVARAAGRAV QATSVAGVAQ  60
   61 RTGATIYYIE IAPEGVAAPV FSLAPAAGDV DILIAAEMME AGRAIQRGFV TPDRTVLIAS 120
  121 EHRALAVSEK MVPGNGIAQA DEVMAAAEIA AARFLSADME RLAVAKGSVI SASLFGALAG 180
  181 SGALPFPRDA FETAIRNSGK GVEASLAAFT AGFEAVSAGP AQPEAAVTAK TPAEPAVQGP 240
  241 SAQLAAWAAL TARVEALPAD AREMALAGLR KVVAFQDCTY GGEYLDRLTA LARQDEPAQG 300
  301 FELTREAAKH IANAMAYDDV IRVAGRKTRA ARRARIDAEM GRSPQQGMQV TEFLHPRAEE 360
  361 ISSLLPAGLG ARVAASPRWM ARLDRWFGHG RRIRSDRVSG FLQLYLLAGL RGYRRRTLRH 420
  421 AQEQAHLEAW LHKVGETRER DYDLAMELLR CRRLIKGYSD THARGLSKFD RVMAGADLVA 480
  481 GRVDAADWVR RLREAALQDE EGRALDGALK TVRSFSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.46
Transmembrane Helix	18	39	0.54
Cytoplasmic	40	161	0.56
Transmembrane Helix	162	183	0.62
Non-Cytoplasmic	184	517	0.95