YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696338, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRCPDALAH RFTREEDMKH FARLVAAAIV AASTGAAAWA ADTTLRISTW LPPTHGINTE  60
   61 IFAGLIGMME EATDGQVSGE LVFGLAPPPA QMDLIQDGAA DMAIIFHGYQ PGRFIGTKLI 120
  121 ELPGYEGNAE AASVAYWRVH TQHLGKLGEH RGVKLVALNT HGPGQIHTSK DVASLADLNG 180
  181 LKTRIGGGVA GDVGAALGLV GINVPAPKVY ETLESGAADA VAMNVGERVG FKLNEVAKNL 240
  241 YDMPGGLYRG SFAIIMSQET FDSLPADVQA ALDEKVFGEP ASRMAGAAWD KSDMIAYEAT 300
  301 RGTEGARIVE ASAEDQAAFA AIAAEVTTKV LAELDAAGVD AQAAYDMVKA EMAAN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.80
Transmembrane Helix	21	41	0.80
Non-Cytoplasmic	42	355	0.98