YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696325, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPRLPERA EWGTFALILA CYGAWLAVIF GLAGLSLWLA IAAMGLVAAL HSSLTHEALH  60
   61 GHPFRYRWLN EALMALPLTL CIPYNRFRDL HLAHHLDANL TDPYDDPESN YLDPAIWSRL 120
  121 PGWQRRLYAL NNTLAGRMVL GPLIGTACFL RDEARGALRG DRAILLAWAL HLPGMAGVLW 180
  181 VVSLSPMPIW AFALSAYIGL GLLKIRTFLE HRAHEKSRAR TVVIEDRGLL AFLFLNNNYH 240
  241 VVHHMNPGAP WYALPALYRA GKERYLGCNE GYSYRSYGEV FRRYFWRAKD PVPHPLWPKP 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	11	0.91
Transmembrane Helix	12	33	0.85
Non-Cytoplasmic	34	36	0.54
Transmembrane Helix	37	55	0.82
Cytoplasmic	56	67	0.61
Transmembrane Helix	68	87	0.53
Non-Cytoplasmic	88	127	0.59
Transmembrane Helix	128	150	0.54
Cytoplasmic	151	163	0.86
Transmembrane Helix	164	182	0.95
Non-Cytoplasmic	183	188	0.75
Transmembrane Helix	189	208	0.94
Cytoplasmic	209	300	0.91