YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696314, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.95
Transmembrane Helix	14	38	0.88
Non-Cytoplasmic	39	44	0.88
Transmembrane Helix	45	68	0.91
Cytoplasmic	69	85	0.88
Transmembrane Helix	86	109	0.87
Non-Cytoplasmic	110	165	0.88
Transmembrane Helix	166	193	0.85
Cytoplasmic	194	218	0.94
Transmembrane Helix	219	244	0.85
Non-Cytoplasmic	245	251	0.88
Transmembrane Helix	252	273	0.94
Cytoplasmic	274	279	0.87
Transmembrane Helix	280	301	0.90
Non-Cytoplasmic	302	307	0.81
Transmembrane Helix	308	329	0.92
Cytoplasmic	330	349	0.88
Transmembrane Helix	350	370	0.95
Non-Cytoplasmic	371	378	0.90
Transmembrane Helix	379	400	0.92
Cytoplasmic	401	405	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPLVIRNR NFRLLFTAGA LTNLGDGVLV LAVPWLAALM TRDAVAIAAV AAAARLPWLL  60
   61 FALPAGVIID RSDRRKLIAR ADLMRAGIVL AILLLALGDP APGAIWALAG LAFLLGSAEV 120
  121 LRDNAAQTIL PALVDPDDLE AANGQLWSTE QLTGQFIGPP LAGVLISAGI AVPFGLDVAV 180
  181 LVLAAGLVWL ISLPPQVPSR ARFAQALAEG IAFMRGDALL LRLAVVLGLA NFIAMATITV 240
  241 QVLFAQEVLG LGAAHYGMVL SAGAVGAICG SLLAPRAMRL IGTQACLFLS IAVWGAGYAS 300
  301 IGLSNSGWVM GLALTAIMAA AMLWNVITVS WRQRRIPPAM LGRVNSIYRF FGWGSMPLGA 360
  361 LAGGALVVLA EQQMSREMAL RAPFLLAGLC CLALLIYALA RLRLE