YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696308, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.64
Transmembrane Helix	10	44	0.71
Non-Cytoplasmic	45	55	0.62
Transmembrane Helix	56	73	0.91
Cytoplasmic	74	84	0.84
Transmembrane Helix	85	107	0.91
Non-Cytoplasmic	108	112	0.80
Transmembrane Helix	113	133	0.93
Cytoplasmic	134	149	0.86
Transmembrane Helix	150	171	0.87
Non-Cytoplasmic	172	203	0.91
Transmembrane Helix	204	226	0.92
Cytoplasmic	227	240	0.85
Transmembrane Helix	241	259	0.90
Non-Cytoplasmic	260	264	0.51
Transmembrane Helix	265	281	0.82
Cytoplasmic	282	292	0.70
Transmembrane Helix	293	312	0.86
Non-Cytoplasmic	313	318	0.76
Transmembrane Helix	319	338	0.94
Cytoplasmic	339	348	0.81
Transmembrane Helix	349	370	0.92
Non-Cytoplasmic	371	382	0.77
Transmembrane Helix	383	401	0.96
Cytoplasmic	402	626	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESFLYQATI YLAAAVIAVP LAARLGLGSV LGYLAAGLII GPVLGLVGAE TADLQHVAEF  60
   61 GVVMMLFLIG LELEPRALWD MRDKLLGLGG LQVGVSTLAI MVVAMVAGQP WSVALAVGLT 120
  121 LSLSSTAIVL QTLSEKGLMQ TNGGRATFSV LLTQDIAVIP ILAFLPLLAS APVAHFAGDG 180
  181 SINRVHKAGA GHEASLSLVE GLPGWAVTLV TIAAVAFVVL AGIYLTRPLF RFIHASRLRE 240
  241 MYTALALMIV VGISFLMTLV GLSPALGAFL AGVVLANSEF RHEMESDLEP FKGLLLGLFF 300
  301 ITVGAGIDVG FFLADPLDLI GLALLVILFK GVILYIVGRA FQLKGRDRWL FTLGLAQAGE 360
  361 FGFVLLAFST QQNVIPAHLS QKLLMIIALT MMITPLLFIL YELLSRRMRD HVADMVPDTI 420
  421 DEQGPVIIAG IGRFGQIVNR LVTASGFKTI VLDHDMETIQ LMRRFGVKGF LGDPTRPELL 480
  481 KAAGLAKAQV LVAALDDDNQ VTKLVAYARR QRPDLHIIAR ARDRNHVYEL YRAGANDIVR 540
  541 EMFDSSVRAG RYVLENVGLS EYEAAQAAQT FYHHDRQAVR DLAEVWDPNI PTADNKAYVE 600
  601 RSQALQKDLE TALMELSEEL ASRRSA