YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696306, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKNDIADIS PRDPMLALVL LTRLPLPALP EAAFARQAAA VWAFPLAGLA VGALAWATGA  60
   61 LALAAGLAPV AVAGLMLVVL VMTTGGMHED GLADTADGLW GGFTPERRLE IMKDSHIGTY 120
  121 GVLALILSQG LRLAALSALV AGGALGAAVA AAVWSRALMP VLMAALPNAR GTGLSQSVGR 180
  181 PTPQAVTLGL GLAAVLALLL AGWAVLIPAL LAVLSVLGLA ALARAKIGGQ TGDILGAAQQ 240
  241 LAEITCLLAL SAAL

Type	Start	End	Confidence
Cytoplasmic	1	37	0.79
Transmembrane Helix	38	57	0.83
Non-Cytoplasmic	58	61	0.52
Transmembrane Helix	62	83	0.87
Cytoplasmic	84	132	0.75
Transmembrane Helix	133	158	0.80
Non-Cytoplasmic	159	187	0.61
Transmembrane Helix	188	222	0.77
Cytoplasmic	223	254	0.72