YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CARA_RUEPO
Protein type:	Globular with Signal Peptide
Type Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQNPLSKPT ACLVLADGTV FYGTGFGATG QTVAELCFNT AMTGYQEIMT DPSYAGQIVT  60
   61 FTFPHIGNVG VTPEDDETTD PVAAGMVVKW DPTAASNWRA AEELKGWLAR RGRIAIGGVD 120
  121 TRRLTRAIRQ QGAPHVALAH DPEGKFDLAA LIAAARGFAG LEGMDLAKDV TCAQSYRWDE 180
  181 MRWAWPEGYA RQEAPKHKVV AIDYGAKRNI LRCLASSGCD VTVLPATATA AEVLAHAPDG 240
  241 VFLSNGPGDP AATGEYAVPM IREILDTTSL PVFGICLGHQ MLALALGGRT VKMNHGHHGA 300
  301 NHPVKDLETG KVEITSMNHG FAVDAQSLPE GVVETHRSLF DGSNCGIRMS ERPVFSVQYH 360
  361 PEASPGPQDS FYLFERFAAA MDAQKAEV

Type	Start	End	Confidence
Signal Peptide	1	27	0.55
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	388	0.96