YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696242, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.35
Transmembrane Helix	5	26	0.87
Non-Cytoplasmic	27	41	0.31
Transmembrane Helix	42	65	0.83
Cytoplasmic	66	71	0.27
Transmembrane Helix	72	90	0.75
Non-Cytoplasmic	91	96	0.40
Transmembrane Helix	97	122	0.86
Cytoplasmic	123	127	0.42
Transmembrane Helix	128	148	0.70
Non-Cytoplasmic	149	162	0.69
Transmembrane Helix	163	187	0.86
Cytoplasmic	188	220	0.77
Transmembrane Helix	221	239	0.73
Non-Cytoplasmic	240	248	0.72
Transmembrane Helix	249	270	0.89
Cytoplasmic	271	280	0.89
Transmembrane Helix	281	304	0.86
Non-Cytoplasmic	305	310	0.77
Transmembrane Helix	311	333	0.93
Cytoplasmic	334	341	0.79
Transmembrane Helix	342	362	0.92
Non-Cytoplasmic	363	375	0.79
Transmembrane Helix	376	397	0.91
Cytoplasmic	398	403	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTETLHISAF MTVTLGLAVY LVGVRINDRL PFLERFSIPE PVTGGLLASL VVLGLNSVFG  60
   61 IELAFDLTGR DFLLVLFFTG IGLNARLGDL IAGGKPLAIL LVLTLLTILA QNVIGVLGAV 120
  121 VFGFPPQAGV LFGSAALIGG HGTAIAWAPE VAQATGLASA TELGVAVATL GLVIAALIGG 180
  181 PIATYLVESR KLTPNRPDEE LTVGLPNEMD EEPPQIDHKS LMRVLLTLNV AILLGYGLQE 240
  241 SIEELGLKLP LFVPCLLSAI VVGNLRTALF PRALRVSRTP TLALISEFAL GAFLAMSLMS 300
  301 LQLWTIAETG LALAVIIAAQ TLFALGFILL VLFRAMGGGY RAAVLAAGFG GFALGATPTA 360
  361 IANMTAVTKR YGPSPLAFIV LPLVSAFFVD IANAVVIQMI VNF