YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MURC_RUEPO
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPATKLPQD VGPIHFVGIG GIGMSGIAEV LLNLGYRVQG SDLKGSKITE RLAGLGAEIF  60
   61 EGQRAENLDG AAVVVISSAI KPGNPELDGA RAQGLPVVRR ADMLAELMRL KSNIAIAGTH 120
  121 GKTTTTTMMA ELMVAGGFDP TVINGGIIHA YSSNARMGQG EWMVVEADES DGSFNRLPAT 180
  181 VAIVTNIDPE HMEHWGSIEA LRQGFYDFVS NIPFYGIAVC CTDHAEVQAL VGRITDRRVR 240
  241 TYGFNAQADV RATNLTYKGG VAHFDILLQH EDMVIEGCTL PMPGDHNVSN ALSAVAVARH 300
  301 LGMKADEIRA ALAAFGGVNR RFTKVGEVNG VTIIDDYGHH PVEIAAVLKA ARQASEGRVI 360
  361 AVHQPHRYSR LSNLFDDFCA CFNEADVVAI AEVYAAGEAP IPGADRDALV AGLIRHGHRH 420
  421 ARAILSEEDL ERLVREQTRP GDMVVCLGAG TISAWANGLP DRLKG

Type	Start	End	Confidence
Cytoplasmic	1	11	0.48
Transmembrane Helix	12	32	0.58
Non-Cytoplasmic	33	465	0.86