YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UEHC_RUEPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.57
Transmembrane Helix	10	35	0.86
Cytoplasmic	36	48	0.57
Transmembrane Helix	49	70	0.86
Non-Cytoplasmic	71	92	0.60
Transmembrane Helix	93	119	0.80
Cytoplasmic	120	135	0.82
Transmembrane Helix	136	159	0.86
Non-Cytoplasmic	160	170	0.79
Transmembrane Helix	171	195	0.90
Cytoplasmic	196	215	0.93
Transmembrane Helix	216	235	0.94
Non-Cytoplasmic	236	240	0.79
Transmembrane Helix	241	262	0.87
Cytoplasmic	263	271	0.89
Transmembrane Helix	272	295	0.90
Non-Cytoplasmic	296	302	0.83
Transmembrane Helix	303	326	0.73
Cytoplasmic	327	327	0.39
Transmembrane Helix	328	353	0.71
Non-Cytoplasmic	354	360	0.50
Transmembrane Helix	361	386	0.68
Cytoplasmic	387	398	0.50
Transmembrane Helix	399	420	0.91
Non-Cytoplasmic	421	428	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATIFLTMI VLLLLGFPMM IPLIAGAFIG FLMLFGDLAR TETMVQQMLA GIRPASLIAV  60
   61 PMFIFAADIM TRGQSAGRLI NVVMAYVGHI RGGLAISTAA ACTMFGAVSG STQATVVAIG 120
  121 SPLRPRMLKA GYKDSFVLAL IVNASDIAFL IPPSIGMIIY GVVSSTSIAE LFIAGIGPGL 180
  181 LILVLFSAYA YIYAVRNDVP TEPRASWAER ARTMRQALWP MGFPVIIIGG IYGGVFSPTE 240
  241 AAAACVLYAL VLEVLVFRSM SLADVYDTAK STGLITAIVF ILVGAGAAFS WVISFAQVPQ 300
  301 QILGAIGIAE MGPIGVLFVI SIAFFIGCMF VDPIVVILVL VPVFAPVVKS VGLDPVLVGT 360
  361 IITLQVAIGS ATPPFGCDIF TAIAVFKRPY AEVVRGTPPF ILMLLGVSVA LIFFPQIALF 420
  421 LRDLAFSK