YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56677757, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPPRGQRTL RAKPEQEPQM ARQPAPFAPF EWKIAWRYLR ARRAEGGVSV MTWISLIGIT  60
   61 LAVFALIATL AVRSGFRSDF VGTILGANAH VTVYNPGEYR ENGQIDRTIP NYAEMAARVA 120
  121 EVAGVTRAAP LVKGQVMAAA QNRNAGVEVF GIATGDLAAL PGITNSDRSY GDLSRFDQGI 180
  181 ALGSGVAREL GVTVGDRIKL ISPNGARTPM GTSPRVNAYE VVYVFSAGRY DIDRTRVYMP 240
  241 FGEAQAYFNR EGVADEIEVM VSEPERLDRV LIPILSAAGD GAQVWTWQDA SGGFLRALEV 300
  301 EDNVMFIILS ILVLIATMNI VSGLIMLVKN KGRDIGILRT IGLSEGSILR VFFICGAFTG 360
  361 ILGTLMGVAL GCLFAIYIDP IFSFVNFVMG GGVWDPAIRG IYALPAELRL GDVLKAAGLS 420
  421 LGLSCIVTYF PARRAARLNP VEALRYE

Type	Start	End	Confidence
Cytoplasmic	1	48	0.91
Transmembrane Helix	49	71	0.92
Non-Cytoplasmic	72	303	0.85
Transmembrane Helix	304	328	0.93
Cytoplasmic	329	347	0.94
Transmembrane Helix	348	378	0.85
Non-Cytoplasmic	379	412	0.44
Transmembrane Helix	413	432	0.80
Cytoplasmic	433	447	0.53