YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56677713, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAIVAGFA LGFGLILAIG AQNAFVLRQG LRRQHVFAVC LTCALSDAVL IAAGVAGFGG  60
   61 LARAVPWFEP LMRYGGAAFL IWYGARSLFA ALTKTEALTT GEDARPGGGA ALRPVLLTVL 120
  121 AFTWLNPHVY LDTVVLIGSI SAQYPDRLGF GLGAVLSSFT FFFSLGYGAR LMAPVFARPR 180
  181 AWQVLDTVIA LTMWTIAAKL LLM

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.88
Transmembrane Helix	6	26	0.95
Cytoplasmic	27	35	0.88
Transmembrane Helix	36	58	0.92
Non-Cytoplasmic	59	70	0.78
Transmembrane Helix	71	90	0.87
Cytoplasmic	91	109	0.82
Transmembrane Helix	110	130	0.87
Non-Cytoplasmic	131	147	0.89
Transmembrane Helix	148	169	0.92
Cytoplasmic	170	181	0.80
Transmembrane Helix	182	202	0.84
Non-Cytoplasmic	203	203	0.91