YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56677658, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTMDAILLQ ILNGLDKGSA YALIALGLTL IFGTLGVVNF AHGALFMIGA FCAVMLQRIL  60
   61 NLSFQTIDET QKDFLGNPLK VDTPYVHSWF GPETGAAIID WSVPLAVIFA IPIMLFIGYA 120
  121 MERGLIKHFY KRPHADQILV TFGLAIVLQE IIKYFFGANP IQTPEPSALK GSLDIGLMLG 180
  181 FDPNAIIYPI WRLVYFAFAA VIIGGVFAFL QFTTFGMVVR AGMADRETVG LLGINIDKRF 240
  241 TIMFGIAAGV AGLAGVMYGP LNPPNYHMGM DFLVLSFVVV VVGGMGSLPG AVAAGFLLGV 300
  301 LESFASTTWA TTTIPGINQI IIYLVAIIIL LTRPRGLLGR KGVMED

Type	Start	End	Confidence
Cytoplasmic	1	20	0.81
Transmembrane Helix	21	45	0.86
Non-Cytoplasmic	46	96	0.88
Transmembrane Helix	97	119	0.93
Cytoplasmic	120	137	0.86
Transmembrane Helix	138	157	0.73
Non-Cytoplasmic	158	192	0.63
Transmembrane Helix	193	219	0.83
Cytoplasmic	220	239	0.58
Transmembrane Helix	240	261	0.92
Non-Cytoplasmic	262	271	0.53
Transmembrane Helix	272	300	0.82
Cytoplasmic	301	308	0.44
Transmembrane Helix	309	332	0.83
Non-Cytoplasmic	333	346	0.47