YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56695892, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEISYLGAL FAGLLSFFTP CVLPMVPFYL SYMGGLSMAE LRGDGRIAPG AQRRLIVSSV  60
   61 AFAAGVTSVF MMLGMGATAL GRLFGTYLDT LSWAAAAILV VFGLHFLGVI RVPLLYREAR 120
  121 MDSTMPASTL LGAYLMGLAF GFGWTPCVGP ALAAILMIAS GMGEIWRGGL LLLVYGIGMT 180
  181 APFVVAAFFA RPFLGWVQRH RAAFAWVEKG MGAMLILFAI LIVTGGVNWI ADAMIRWVPG 240
  241 FSALG

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.89
Transmembrane Helix	9	33	0.87
Cytoplasmic	34	54	0.90
Transmembrane Helix	55	77	0.91
Non-Cytoplasmic	78	90	0.80
Transmembrane Helix	91	115	0.86
Cytoplasmic	116	129	0.92
Transmembrane Helix	130	156	0.85
Non-Cytoplasmic	157	170	0.75
Transmembrane Helix	171	190	0.96
Cytoplasmic	191	210	0.81
Transmembrane Helix	211	231	0.94
Non-Cytoplasmic	232	245	0.88