YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56695871, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNKLIAEVF GTFWLVLGGC GSAVLAAGVA DVGIGWAGVS LAFGLTVLTM AYAVGHISGG  60
   61 HFNPAVSLGL MVAGRFDGKL LLPYWAAQVV GAILAALVLY IIVSGGAGFT GVGGFASNGY 120
  121 GEASPQGYSM MSGLVIEVVL TAFFLIIILG ATSKGAPAGF APIAIGLGLT LIHLVSIPVT 180
  181 NTSVNPARST GVALFADGPA LAQLWLFWVA PLIGGALGAV LWKVIAGKDA D

Type	Start	End	Confidence
Cytoplasmic	1	9	0.92
Transmembrane Helix	10	30	0.93
Non-Cytoplasmic	31	40	0.60
Transmembrane Helix	41	63	0.74
Cytoplasmic	64	83	0.71
Transmembrane Helix	84	107	0.87
Non-Cytoplasmic	108	127	0.86
Transmembrane Helix	128	149	0.91
Cytoplasmic	150	157	0.76
Transmembrane Helix	158	177	0.93
Non-Cytoplasmic	178	203	0.88
Transmembrane Helix	204	225	0.93
Cytoplasmic	226	231	0.91