YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56695868, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIVIAGAGS IGCFCGGLLA LGGHDVTLLG RAPLLARIGA HGLRLSDYGG LDLHLGADRL  60
   61 TLATDPACLA QAELVIVTVK TPATAEMASA IATHAPASAP VLSWQNGLEN TRQLRARLPG 120
  121 RDIRAGMVPF NVVPLGEATW HRASSGDIVI AAGPGGLGAA LTVPGLPVAE SLRIEAVQWG 180
  181 KLVINLNNAL NALSGLTLVQ QLADRSWRRL MAAQMAEALA VLRAAEIPVA ATTPLPAWTT 240
  241 PHILRLPNTL FTRIAARMLT VDPSARSSMA YDLEAGRMTE IASLQGEIIR LGRAHDVATP 300
  301 ICSRVAALID AATHDGAGPP RLTVAQIAPP G

Type	Start	End	Confidence
Signal Peptide	1	22	0.72
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	331	0.87