YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56695850, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPSTELSPT QRREMEIGRI QQDIMRRRRR KMMQLLTRLA FFVFLPTLIA GYYFYVVATP  60
   61 MYASKSEFVI LQADGSLGGV GGFFAGTQFA TSQDSISVQS FLESKEAMLL LDRDQNFKAH 120
  121 FQQAEIDPIQ RLAPDATNEE AYKVYSRIVT IGYDPTEGVI RMEVAAPDPQ VATDFSNSLL 180
  181 SYAESRVNNL SGQKREDQMR EARKSFEDAQ KERRKAQEAL VELQQQGALL DPESVIASLR 240
  241 GRIDQVEVQL QEKELQLAAL LDNPRPSKAK VDGARADIAR LNDVLDDLNA RMLDTSSGEN 300
  301 SLARLSVRIQ MAQADLASRD MMLQGALQQM ETTRMEANRQ VRYLTISVNP VPSDEPSYPR 360
  361 SFENTILAFL LFAGIYLMIS LTASILREQV SS

Type	Start	End	Confidence
Cytoplasmic	1	34	0.99
Transmembrane Helix	35	56	0.96
Non-Cytoplasmic	57	69	0.88
Transmembrane Helix	70	91	0.49
Cytoplasmic	92	364	0.55
Transmembrane Helix	365	386	0.92
Non-Cytoplasmic	387	392	0.52