YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56695813, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGEGHIVDM SDIARRGLVL LGCGKMGSAM LAGWLDGGLP AGSVWVIDPY PSDWVKAQGV  60
   61 HVNAELPGDP AIALIAVKPQ MMGDALPQMQ ALGNGTTLFV SVAAGTSIAT YEQILGADTP 120
  121 IVRAMPNTPA AIGRGITALI GNARASAADL DLAEALLKAV GQTVRLEREE QMDAVTGVSG 180
  181 SGPAYVFHLI ETLAAAGTAQ GLPADLAMQL AKATVAGAGA LAEAAEEDPA QLRVNVTSPN 240
  241 GTTQAALEVL MEPETGFPGL LNRAVAAATN RSRELSRG

Type	Start	End	Confidence
Cytoplasmic	1	16	0.69
Transmembrane Helix	17	35	0.64
Non-Cytoplasmic	36	90	0.88
Transmembrane Helix	91	111	0.54
Cytoplasmic	112	278	0.52