YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56677513, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.91
Transmembrane Helix	32	54	0.90
Non-Cytoplasmic	55	64	0.80
Transmembrane Helix	65	84	0.93
Cytoplasmic	85	92	0.65
Transmembrane Helix	93	112	0.90
Non-Cytoplasmic	113	118	0.80
Transmembrane Helix	119	140	0.94
Cytoplasmic	141	149	0.73
Transmembrane Helix	150	169	0.92
Non-Cytoplasmic	170	184	0.83
Transmembrane Helix	185	206	0.90
Cytoplasmic	207	213	0.82
Transmembrane Helix	214	237	0.88
Non-Cytoplasmic	238	258	0.86
Transmembrane Helix	259	280	0.90
Cytoplasmic	281	299	0.89
Transmembrane Helix	300	319	0.74
Non-Cytoplasmic	320	335	0.64
Transmembrane Helix	336	360	0.81
Cytoplasmic	361	368	0.57
Transmembrane Helix	369	389	0.93
Non-Cytoplasmic	390	398	0.61
Transmembrane Helix	399	419	0.84
Cytoplasmic	420	427	0.60
Transmembrane Helix	428	448	0.92
Non-Cytoplasmic	449	470	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADTSIGTPE QLRDPNYTPP LIKAVPLGIQ HVLAMFVSNV TPAIIVAGAA GFGFGSNSPD  60
   61 FPELLYLIQM SMLFAGVATL LQTVTLGPVG AGLPIVQGTS FAFLPIMIPL VAGKGVDALA 120
  121 ALFGGAILGG LFHFCLGFFI GRIRFALPPL VTGLVVTMIG LALVKVGIQY AAGGVPAIGT 180
  181 PEYGSALNWS AALVVILVTL GLKFFARGML SVSAVLLGLI VGYVYALMVG MVTFEAIGTS 240
  241 WSRAAGFALP VPFKYGFEFS LAAVIGFAMM AVVSAIETVG DVSGITKGGA GREASDNEIA 300
  301 GATYADGLGT AVAGLFGGFP NTSFSQNVGL IAMTGVMSRH VVTIGALFLI LCGLVPKVGA 360
  361 IIRTVPIEVL GGGVIVMFGM VVAAGVSMLS DVHWNRRNMV IFAIALSVGL GLQLEPGAVQ 420
  421 HLPDTARILM TSGLLPAAVI AIVLNLILPQ ELGEEATEEV SGGMDGHGRR