YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56695684, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDLTAGQGE LARIREDYTA LTQRKRVYGG ILLILFVSLM AAGFHTADDR NAGGFVDGWR  60
   61 RIFDYPAEVL SEALEKSAQL PGHLVHFLPA LVETLNIAAA ATLIGTLGGT ALALLSTRGL 120
  121 AYWPRLIPLF RRIADICRAV PEIVIALVLI FVLGGGPVPA MIAIAIHTAG ALGKLFSEVA 180
  181 ENVSLKPVEG LESTGANWAQ RMYLGVIPQV GPNFVSYALL RFEINIRASA ILGFVGAGGI 240
  241 GYELRNAMSW GQGRYDEAAA IFLLLFVTIV AVDQISDRLR ARLTHGARAG ATA

Type	Start	End	Confidence
Cytoplasmic	1	26	0.98
Transmembrane Helix	27	47	0.93
Non-Cytoplasmic	48	96	0.97
Transmembrane Helix	97	122	0.87
Cytoplasmic	123	142	0.87
Transmembrane Helix	143	166	0.89
Non-Cytoplasmic	167	200	0.87
Transmembrane Helix	201	220	0.65
Cytoplasmic	221	225	0.63
Transmembrane Helix	226	244	0.81
Non-Cytoplasmic	245	257	0.66
Transmembrane Helix	258	276	0.89
Cytoplasmic	277	293	0.84