YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56695675, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQAVIVSTA RTGLAKSFRG SFNVTHGATM GGHAVQAAVA RAGLDGSEIE DCIIGCGFPE  60
   61 GETGSNIGRQ IAIRAGLPVT ASGMTVNRFC SSGLQTVALA AQAITEGGSG PMVAGGVESI 120
  121 SMVQPKARPA PEAWIQEHKP AIYMAMIETA DIVAQRYGLS RAYQDEYSLR SQQRIAAAQA 180
  181 EGKFADEIVP MQTKMAVKDK ESGEVSMHEV TVDRDECNRP STTLEGLAGL EPVRGAGNFV 240
  241 TAGNASQLSD GAAALVLMEA AEAERRGLEP LGAFKGFCVA GCEPDEMGIG PVFAVPRLLE 300
  301 RHGLKVDDID LWELNEAFAS QCLYSRDRLG IDPEKYNVNG GSIAIGHPFG MTGARMTGHL 360
  361 MLEGKRRGAK LGVVSMCIGG GMGAAGLFEI F

Type	Start	End	Confidence
Non-Cytoplasmic	1	339	0.51
Transmembrane Helix	340	354	0.31
Cytoplasmic	355	367	0.67
Transmembrane Helix	368	388	0.78
Non-Cytoplasmic	389	391	0.77