YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56677375, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.58
Transmembrane Helix	8	35	0.71
Cytoplasmic	36	60	0.62
Transmembrane Helix	61	80	0.66
Non-Cytoplasmic	81	103	0.78
Transmembrane Helix	104	127	0.92
Cytoplasmic	128	147	0.84
Transmembrane Helix	148	172	0.88
Non-Cytoplasmic	173	180	0.83
Transmembrane Helix	181	205	0.87
Cytoplasmic	206	225	0.93
Transmembrane Helix	226	247	0.94
Non-Cytoplasmic	248	260	0.82
Transmembrane Helix	261	280	0.89
Cytoplasmic	281	292	0.73
Transmembrane Helix	293	314	0.86
Non-Cytoplasmic	315	324	0.72
Transmembrane Helix	325	350	0.77
Cytoplasmic	351	352	0.57
Transmembrane Helix	353	372	0.72
Non-Cytoplasmic	373	374	0.33
Transmembrane Helix	375	405	0.62
Cytoplasmic	406	419	0.45
Transmembrane Helix	420	442	0.86
Non-Cytoplasmic	443	450	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAALIGFAL VLVLVLLRLP IVFAMGLVGT LGFAYERGGS ILDERGLKAA MSMVGRQVMD  60
   61 TAQDYGLSVV PLFILMGLFV NKGGMARELY AVSNAFLGHF RGGIAMATVA ACGGFSAICG 120
  121 SSLATAATMS KVAMPEMRRY GYTDELSTAS IAAGGTLGIL IPPSVILVIY GLLTETSIGK 180
  181 LFMAGIIPGI LGILFYLFAV RWTVWRNPEA GPAGERAGWG ERVRALGSVW AVLLLFFLVI 240
  241 GGLYGAFDFH PLNLTFSPTE AAGMGAAGAF LIALFRGGLT VGSTFEVLKE TSFTAASLFS 300
  301 VLIGAQVFSN FINLAGLPEA LIAMVTAYDV APFVVILMIL GIYIILGCVF ESLSMLLLTV 360
  361 PIFFPLVTSL GYDPIWFGIV VVVVTEISLI TPPVGLNVFI LKGVVGDVST GTIFRGVTPF 420
  421 WIADIFRLAL IVLVPVVVLY LPQQMGAMGH