YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56677318, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTASRSTTII FDKNDETSRK EGAKIVAIDG TPISIGQSIK TAAGQFSLTD KGAISFQPPS  60
   61 GLQMEPIWLP PPEAVVSRLG EIAKSGYRDS TLWEHLGFSL FRVIAGFFFG ALVGIPLGYA 120
  121 MGLSDWFRGW FDPIVEFMRP VPPLALIPLV IIWAGIGETG KIILLFLAAL WIMAIAARSG 180
  181 VSGVRISKVH AAYSLGASKA QIMRYVIVPN SLPEIFTGAR VAMGVCWGTV VAAELVAAEK 240
  241 GAGMMIMVAS KFQLTDIVIM GIILIGVIGF GIDILMRWAE RVLVPWKSKG

Type	Start	End	Confidence
Cytoplasmic	1	97	0.94
Transmembrane Helix	98	121	0.89
Non-Cytoplasmic	122	143	0.76
Transmembrane Helix	144	177	0.75
Cytoplasmic	178	215	0.47
Transmembrane Helix	216	238	0.76
Non-Cytoplasmic	239	253	0.55
Transmembrane Helix	254	276	0.89
Cytoplasmic	277	290	0.58