YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56677285, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTATLTTPDG RPASAFAFGT MQFGGRADAA ASAAMYAACR AAGISHFDTA YVYTDGRSET  60
   61 LLGGMIGAER DRLLIATKVG YLGGAGAANI RAQFDICRQR LGLDMIDALY LHRFDPDTDL 120
  121 NETMECLARL RDAGQIRYVG LSNFAAWQVM KAVAVAGLFD LRIDLLQPMY NLVKRQVEVE 180
  181 ILPMCADQGI AVAAYSPLGG GLLTGKYVGG GAGRLTEDDR YGARYGLDWM PRAAEGLVRI 240
  241 GAELGVDPAT LAVAWVAASP LGAQPIISAR SAEQLRPSLA AMNYEMPPEL YARLTALSPT 300
  301 PPPATDRIEE QA

Type	Start	End	Confidence
Signal Peptide	1	29	0.55
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	312	0.94