YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56695513, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKTLVVGAG GVSHAAVHKM AMNSDIFTEI TLASRTKAKC DAIAASVKER TGVTIQTAAL  60
   61 DAMDVAATVA LIKETGAEIL VNLALPYQDL KLMDACLEAG CHYLDTANYE PEDVAKFEYH 120
  121 WQWAYQDKFK EAGLTAILGS GFDPGVTSVF ATWLKKHKLA TIRQIDVLDA NGGSNDQAFA 180
  181 TNFNPEINLR EVLAEARHWE NGAWQVTPAM THKVEFDFPG IGPKNMYLMY HEELESLSAH 240
  241 FPEIERARFW MTFGDAYIMH AKVLENVGMT RIDPVMHDGK EIIPIQFLKT LLPDPGTLAE 300
  301 ETKGKACIGD IATGQAKDGS GEKTYYIYNI CDHEECFREV GSQAVSYTTG VPAMIGAAQV 360
  361 LKGNWVEPGV WNMEQLDPDD FMDMLNNHGL PWQVHELDGP VSF

Type	Start	End	Confidence
Signal Peptide	1	15	0.91
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	403	0.99