YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56695503, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDDRTGLAS ATRRNFLKLA GSGSFTAALV AGAAGTLWST EAAAQTAKEE KEREAAASHV  60
   61 MTVATAYVLG ASRSYPIMQL DLKENIQNAT NGKVYVKLAP GGQLGAGGAL VQKVQGGTIQ 120
  121 AAQHSLSNFA PFASAVDLIN MPYFCGSNQR FTNLVSSDAW KTEVHPKVEA AGFKALFYIV 180
  181 IDPRVVAVRK GGNAVITPGD LAGVKFRVPG SKMLQQYYRM VGANPTPVAW GETPSAIKQG 240
  241 VADALDPSVG ALYVFGFKDI LSHVTFTQAV PDSQVFSMNL EWFNGLPADV QEGIMFAGEV 300
  301 TSQQNLAKVP AARAYAMSEL TKSGVEFHSL SADQLAEWQA TGGYQRSEWD SFKTELAGSM 360
  361 DAFNRLEEAA GTMGRYYVHD A

Type	Start	End	Confidence
Signal Peptide	1	42	0.85
N-region	1	33
H-region	34	39
C-region	40	42
Cleavage Site	42	43
Non-Cytoplasmic	43	381	0.99