YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56677186, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.64
Transmembrane Helix	6	25	0.74
Cytoplasmic	26	32	0.70
Transmembrane Helix	33	54	0.82
Non-Cytoplasmic	55	66	0.82
Transmembrane Helix	67	90	0.88
Cytoplasmic	91	97	0.83
Transmembrane Helix	98	118	0.88
Non-Cytoplasmic	119	122	0.73
Transmembrane Helix	123	142	0.89
Cytoplasmic	143	163	0.86
Transmembrane Helix	164	185	0.90
Non-Cytoplasmic	186	200	0.76
Transmembrane Helix	201	223	0.84
Cytoplasmic	224	232	0.82
Transmembrane Helix	233	255	0.89
Non-Cytoplasmic	256	262	0.72
Transmembrane Helix	263	284	0.86
Cytoplasmic	285	290	0.62
Transmembrane Helix	291	307	0.83
Non-Cytoplasmic	308	309	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYLSIAAGL IGLFLGGEAL VRGSVGLAQR LGLPPLLIGL TVVGFGTSTP ELLVSVDAAL  60
   61 RGVPDIALGN ILGSNIANIL LIGGITSLIW PIRGKPVGLW RDLTVMILAT LALTPILLGG 120
  121 QVIRVVGLVL LLSLVAYLVW SYRQAGGPCA EDTETDLPDV PARPFVAPAL IGAGLLGLMI 180
  181 GARLLVDGAV SVAQGLGVSD AFIGLTIVAV GTSLPELATS VIAAYRRQSE IAVGNIVGSN 240
  241 IFNVLGILGA TAVIAPIPVA SRFALFDLPV ALAAAVTFSV LLLWRAGVSR GAGVLLLLAY 300
  301 AAYVWAAQG