YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56695435, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.91
Transmembrane Helix	36	61	0.85
Non-Cytoplasmic	62	75	0.89
Transmembrane Helix	76	96	0.54
Cytoplasmic	97	111	0.58
Transmembrane Helix	112	133	0.92
Non-Cytoplasmic	134	152	0.58
Transmembrane Helix	153	177	0.86
Cytoplasmic	178	186	0.72
Transmembrane Helix	187	211	0.85
Non-Cytoplasmic	212	230	0.82
Transmembrane Helix	231	254	0.91
Cytoplasmic	255	270	0.71
Transmembrane Helix	271	293	0.81
Non-Cytoplasmic	294	301	0.80
Transmembrane Helix	302	321	0.93
Cytoplasmic	322	358	0.89
Transmembrane Helix	359	383	0.79
Non-Cytoplasmic	384	405	0.83
Transmembrane Helix	406	427	0.87
Cytoplasmic	428	437	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIGFVRTE MLPEREPPAS TVGALGWARA NLFSNWFNSV LTLASLYAVF AILAAVLPWI  60
   61 FSPTWNGTSL SNCREILTAA GSVGDHGTSG ACWGVIRERW IQLLFGFYPS ELYWRPILAF 120
  121 ILLGVALAPV LFSDKMPSKM LIFSGLYPFI FPWLLWGGTI WGPIAALLGF VLGWVIYSAV 180
  181 SKTMSSLIGI LLGAAAALVW WLVLAGFFVG VFDSVLAIGI EAVESRKFGG FMLSITIGVV 240
  241 AIACSLPLGI VLALGRQSDL LIVKYICVGF IEFIRGVPLI TLLFVASTLL NIFMPPGTNF 300
  301 DIILRVLIMV TLFAAAYMAE VIRGGLAALP KGQYEGADSL GLNYWQAQRL IIMPQALKIS 360
  361 IPGIVSTFIG VFKDTVLVSI IGLLDPLGLS NAIRADANWN GIVWEIYGFI ALIFFVFCFG 420
  421 MSRYSMYLER KLHTGHR