YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56677118, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDANPTGLD AYKPAEIARL VETAGVAKAG LGAAQTLTLA VLAGAFIGFG GAAYTMVMTG  60
   61 ADTGFGPARF LGGVVFSLGL ILVIVGGAEL FTGNALMVMA AVDRRITLAA LLRNWGLVYL 120
  121 GNLLGAVGLA LAFALTGLLD GLMGDTAQAI ARGKAALDPG AAFMRGVLCN AMVCLAVWLT 180
  181 FAARTAAGKI LAILWPISAF VLLGLEHSVA NMYLIPQGML AGAEVTPGAA LANLFWVTLG 240
  241 NILGGAGGVA LAYRFAYLR

Type	Start	End	Confidence
Cytoplasmic	1	35	0.93
Transmembrane Helix	36	57	0.89
Non-Cytoplasmic	58	73	0.81
Transmembrane Helix	74	98	0.86
Cytoplasmic	99	114	0.89
Transmembrane Helix	115	138	0.89
Non-Cytoplasmic	139	160	0.94
Transmembrane Helix	161	182	0.93
Cytoplasmic	183	190	0.86
Transmembrane Helix	191	210	0.94
Non-Cytoplasmic	211	233	0.83
Transmembrane Helix	234	257	0.88
Cytoplasmic	258	259	0.92