YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56677060, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLASKRILLI IGGGIAAYKT LDLIRRLRER GAAVTPVLTG AAEEFVTPLS VSALAGEKVY  60
   61 RALFDLTDEA EMGHIQLSRS ADLVVVAPAT ADLMGKMAAG LANDLASTLL MATDTPVLIA 120
  121 PAMNVRMWQH PATRRNHAQL AADGIRFIGP NEGDMACGEY GPGRMSEPLE IVAAIEAALG 180
  181 DGPLKGKRVL VTSGPTHEPI DPVRYIANRS SGAQGTAVAR ALAALGAEVV FVTGPADVPP 240
  241 PDGVEVVRVQ SAREMDAAVD AALPVDAGVF AAAVADWRVA SASDRKLKKS RDGLPVLEFA 300
  301 ENPDILKRVS RMEAGRPPLV VGFAAETNDV IENATAKRLR KGCDWIVAND VSPATGIMGG 360
  361 SENAVILITG EGAEEWPRMS KEAVADRLAR RIAETLVG

Type	Start	End	Confidence
Signal Peptide	1	17	0.57
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	398	0.97