YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56676898, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRRFRPRGN ENPMLKRVHF PSSLLPYLLV APQILITLVF FIWPASQAVY QSFLIEDAFG  60
   61 LSTEFVWFEN FELLIEDAQY LQSFGRTILF SAAVAVLSMG SALILAGFAD RVVRGATTYR 120
  121 TLMIWPYAVA PVLAGALWVF MFNPTLGIFP FLLDMVGIDW NHYLNGTQAM TLVIFAAAWK 180
  181 QIAYNFLFYL AAMQSIPRSL IEAAAIDGAG PVRRFVDHIF PLISPTTFFL LVINAVYAFF 240
  241 DTFGIIHAVT QGGPANSTTI LVYKVYNDGF VGLDLGGSAA QSVILMILVI AMTVVQFRFI 300
  301 ERKVEY

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	43	0.94
Non-Cytoplasmic	44	87	0.96
Transmembrane Helix	88	109	0.94
Cytoplasmic	110	122	0.86
Transmembrane Helix	123	142	0.91
Non-Cytoplasmic	143	168	0.78
Transmembrane Helix	169	189	0.83
Cytoplasmic	190	218	0.90
Transmembrane Helix	219	240	0.85
Non-Cytoplasmic	241	277	0.88
Transmembrane Helix	278	300	0.88
Cytoplasmic	301	306	0.98