YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56676897, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVENRPILNV ITHLVLILGI VIVALPIWIT FVAATHDAVR MTQAPIPMLP GTHFWENFTQ  60
   61 TLFGSGLSGT ETAPVWRMLL NSLAMAMMIA LGKIAISLIS AFAIVYFKFP FRMFFFWLIF 120
  121 VTLMLPVEVR ILPTFEVVAD LGMLNSYWGL SIPLIASATA TFMFRQVFLT IPDEMLESAR 180
  181 IDGAGPLRFF WDILIPLSRT NIAALFVILF IYGWNQYLWP LLITTDTDMT TIVMSIKQML 240
  241 EAAEQSPQWN IIMMTALLAM LPPVFVVVAM QKLFVQGLTE TDK

Type	Start	End	Confidence
Cytoplasmic	1	9	0.87
Transmembrane Helix	10	32	0.91
Non-Cytoplasmic	33	82	0.86
Transmembrane Helix	83	106	0.87
Cytoplasmic	107	113	0.74
Transmembrane Helix	114	132	0.92
Non-Cytoplasmic	133	146	0.83
Transmembrane Helix	147	169	0.90
Cytoplasmic	170	188	0.94
Transmembrane Helix	189	212	0.89
Non-Cytoplasmic	213	248	0.82
Transmembrane Helix	249	270	0.88
Cytoplasmic	271	283	0.70