YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56695037, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.70
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.69
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	557	0.94
Transmembrane Helix	558	578	0.59
Cytoplasmic	579	710	0.56
Transmembrane Helix	711	733	0.90
Non-Cytoplasmic	734	762	0.54
Transmembrane Helix	763	785	0.89
Cytoplasmic	786	791	0.43
Transmembrane Helix	792	816	0.86
Non-Cytoplasmic	817	820	0.48
Transmembrane Helix	821	845	0.83
Cytoplasmic	846	849	0.42
Transmembrane Helix	850	867	0.46
Non-Cytoplasmic	868	880	0.74
Transmembrane Helix	881	903	0.90
Cytoplasmic	904	908	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPAPVASLS AVTHRYGSTL ALSDVTLDIP AGCMAGLIGP DGVGKSTLLA LIAGVRKLQA  60
   61 GGAIVLGGDI TDRHHLRACN HRIAYMPQGL GRNLYPTLSV YENLDFFGRL FGQSEAERRA 120
  121 RINNLLTATG LDPFPDRPAG KLSGGMKQKL SLCSALIHDP DLVILDEPTT GVDPLSRQQF 180
  181 WDLIDHIREE RPAMSVIVAT AYMEEAERFD WLAAMNAGQV ISTGSPIEIR NAAGQPTLEK 240
  241 AFIAMLPEAD RQGHRIDEVP PRRPVIGPPA IEAKGLTCRF GDFIAVDHVE FQIEPGEIFG 300
  301 FLGSNGCGKT TTMKMLTGLQ KASEGKALLF GEALNPDDMA TRRQVGYMSQ SFSLYGELTV 360
  361 RQNLELHARL YQLPIETRAE RVAQMLHDFD LAEEADKRPD GLPLGIRQRL QLAVAVIHSP 420
  421 EVLILDEPTS GVDPVARDGF WRHLIKLSRD DGVTIFVSTH FMNEAARCDR ISLMHAGKVL 480
  481 AVGTPEDLAR SKDTDDLEEA FVGYLREAAG NTDGRASETP AAKLPDRLEK PDRLFDLARL 540
  541 WAFARRESIE ILRDPMRLAF AFLGPVILML TFGYGISFDV QELPYAVLDR DKSAESRNLM 600
  601 QSFSGSRYFV ERPAAGSVTE LDIRMRSSEL VIAVEVPPGF GKSLLRGDQP EVRVAVDGAM 660
  661 PFRAETTRGY LQGLAASYMS DQTERLYGHA FDPSAASVET RFRYNQAFKS VFALIPSVIM 720
  721 LMLVLIPAMM AAMGVVREKE TGSIANFRST PVTRTEFILG KQLPYVAIAM LSFASLIIVS 780
  781 YGVFGVLIKG SVLALLVGTL LYVLATTGFG VLVSTFTRTQ VAATFAAAVI SIIPAVNFSG 840
  841 LLVPVSSLSG GGRLIGLSFP SSWYQQISMG TFTKGLGFPE LWLNHVALAG FAALFIAVSV 900
  901 LALNKQET