YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56381701, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAERRKKKK TWLRWVTGLL VVLFAGAGIF AYSIYHHVKQ TANQMHENVN WKSEKRKENV  60
   61 SFERKTPISI LLIGVDERKG DRGRADTLIV MTVNPNKQSI DMVSVPRDTR TEIIGKGTKD 120
  121 KINHSYAFGG VEMTMATVEH FLDIPIDYYI KVNMESFRDI VDAVGGVTVN NPFAFTYEGT 180
  181 HFPKGEITLN GDEALKYSRM RKEDPRGDFG RQDRQKQIIQ AIIEKGASFS SLANYSDVLA 240
  241 AIGKNVKTNL TFEEMKEIQA NYKDARKQIK QLHITGQGTK INGIYYLIVP ESERLAISNE 300
  301 LKEHLELKAT AAK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.56
Transmembrane Helix	12	32	0.54
Non-Cytoplasmic	33	313	0.99