YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56381697, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVRKAIIP AAGLGTRFLP ATKAMPKEML PIVDKPTIQY IVEEAVASGI EDIIIVTGKG  60
   61 KRAIEDHFDN AFELEQNLIQ KGKYDLLEKV KEPSKVDIHY IRQKEPKGLG HAVWCARNFI 120
  121 GDEPFAVLLG DDIVQAETPC LKQLIDQYEQ TLSSVIGVKR VPDNETHRYG IIDPIEQHGR 180
  181 RYQVRQFVEK PAPGTAPSNL AIMGRYILTP EIFLFLEKQE AGAGGEIQLT DAIQKLNEIQ 240
  241 RVFAYEFEGK RYDVGEKLGF IQTTIEFALQ HDELREDLIQ FMEKLLNDVK VEEK

Type	Start	End	Confidence
Signal Peptide	1	24	0.85
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	294	0.99