YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56420725, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRGKGMKFV GDSRVPAVRK PNIPKDYSEY PGKTEVFWPN FLLKEWLVGS VFLVGFLCLT  60
   61 VAHPSPLERI ADPTDTTYVP LPDWYFLFLY QLLKYSYASG PYTVVGAIII PGLAFGALLL 120
  121 APFLDRGPER RPWKRPVATG MMLLALAAMI YLTWEAVVTH DWKKAAEQGK IRAEVKIDTN 180
  181 AEGYKIAQAN TCTSCHGQNL SGGAGPSLIG TGLKPEEIAK IAREGKGNMP PGVFKGTDEE 240
  241 LKKLSEFIAG LKAE

Type	Start	End	Confidence
Cytoplasmic	1	45	0.89
Transmembrane Helix	46	64	0.93
Non-Cytoplasmic	65	101	0.83
Transmembrane Helix	102	124	0.89
Cytoplasmic	125	135	0.83
Transmembrane Helix	136	154	0.89
Non-Cytoplasmic	155	254	0.87